ENCODE Project at NHGRI   ENCODE Data Coordination Center at UCSC
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  Mouse ENCODE Downloads

This page contains links to directories containing raw and processed data for mouse ENCODE data produced as part of the ENCODE production phase (September 2007-present). For bulk download, retrieval by FTP is recommended. All files here are covered by the ENCODE data release policy.

Bidirectional Promoters
NHGRI BiP  NHGRI Elnitski Bidirectional Promoters
Transcription Factor Binding Sites
Stan/Yale TFBS  Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale